CareDx Inc. has entered a strategic collaboration with 10x Genomics to establish ImmuneScape, a multiomics research ...

The Transplant Company™ – a leading precision medicine company focused on the discovery, development, and commercialization ...

Hi, I am trying to run sopa Baysor cell segmentation pipeline with 10x xenium data. I am using snakemake version 9.14.0, and sopa newest version. When i run ...

Transcriptomics represents a critical discipline in cancer research, enabling comprehensive mapping of gene expression profiles and the identification of fusion genes implicated in tumor development.

Abstract: Spatial transcriptomics (ST) is a groundbreaking genomic technology that enables spatial localization analysis of gene expression within tissue sections. However, it is significantly limited ...

A classifier to assess section integrity. (A) Generation of the transcript mask. The transcript density image was converted to a binary mask using a random forest classifier. (B) Generation of the ...

Not revised: This Reviewed Preprint includes the authors’ original preprint (without revision), an eLife assessment, public reviews, and a provisional response from the authors. In the manuscript, ...

As life sciences enter the era of precision biology, spatial genomics and transcriptomics are transforming our ability to decode gene expression not just at the molecular level, but also within the ...

Thank you for developing such a powerful tool for detecting ctSVGs) I would like to ask whether STANCE is applicable to single-cell resolution spatial transcriptomics data, such as 10x Xenium. Since ...